Gets contingency table

Creates a cross table using two columns from the metadata

crossTab(
  object,
  true = NULL,
  pred = NULL,
  output = c("counts", "fraction", "prop"),
  digits = 2
)

Arguments

object	Seurat object
true	Column name in meta.data slot that corresponds to the true known classes
pred	Column name in meta.data slot that corresponds to the predicted classes if they have been assigned independently from the scPredict() function
output	Return counts, fraction, or proportions? Default: counts
digits	If proportions are returned, number of digits to round numbers

Value

A contingency table

Author

Jose Alquicira Hernandez